Acknowledgements

These materials were drafted with the help from the following contributors:

• Neha Moopen
• Dorien Huijser

Our materials have borrowed liberally from Mock (2022b), Mock (2022a), Hartgerink (2017) and the Quarto documentation (Quarto (n.d.-b)). See also the references.

Frank, Mike, and Chris Hartgerink. 2017. RMarkdown for Writing Reproducible Scientific Papers. Https://libscie.github.io/rmarkdown-workshop/handout.html.

Hartgerink, Chris. 2017. “Composing Reproducible Manuscripts Using R Markdown.” In eLife. Https://elifesciences.org/labs/cad57bcf/composing-reproducible-manuscripts-using-r-markdown; eLife Sciences Publications Limited.

Knuth, D. E. 1984. “Literate Programming.” The Computer Journal 27 (2): 97–111. https://doi.org/10.1093/comjnl/27.2.97.

Lasser, Jana. 2020. “Creating an Executable Paper Is a Journey Through Open Science.” Communications Physics 3 (1): 1–5. https://doi.org/10.1038/s42005-020-00403-4.

Mock, Tom. 2022a. Get Started with Quarto - Getting Started with Quarto. Https://jthomasmock.github.io/quarto-2hr-webinar/.

Mock, Tom. 2022b. Get Started with Quarto - Rstudio::conf 2022 Workshop. Https://rstudio-conf-2022.github.io/get-started-quarto/.

Quarto. n.d.-a. Publish and Share with Quarto :: Cheatsheet. Https://rstudio.github.io/cheatsheets/html/quarto.html.

Quarto. n.d.-b. “Quarto - Guide.” In Quarto. Https://quarto.org/docs/guide/.

The Turing Way Community. n.d. “Research Compendia.” In The Turing Way. Https://the-turing-way.netlify.app/reproducible-research/compendia.

Tierney, Nicholas. 2025. Quarto for Scientists. Https://qmd4sci.njtierney.com/.

Van Lissa, Caspar J., Andreas M. Brandmaier, Loek Brinkman, et al. 2021. “WORCS: A Workflow for Open Reproducible Code in Science.” Data Science 4 (1): 29–49. https://doi.org/10.3233/DS-210031.